Explaining Graph Neural Networks via Structure-aware Interaction Index
Ngoc Bui, Hieu Trung Nguyen, Viet Anh Nguyen, Rex Ying
Abstract
The Shapley value is a prominent tool for interpreting black-box machine learning models thanks to its strong theoretical foundation. However, for models with structured inputs, such as graph neural networks, existing Shapley-based explainability approaches either focus solely on node-wise importance or neglect the graph structure when perturbing the input instance. This paper introduces the Myerson-Taylor interaction index that internalizes the graph structure into attributing the node values and the interaction values among nodes. Unlike the Shapley-based methods, the Myerson-Taylor index decomposes coalitions into components satisfying a pre-chosen connectivity criterion. We prove that the Myerson-Taylor index is the unique one that satisfies a system of five natural axioms accounting for graph structure and high-order interaction among nodes. Leveraging these properties, we propose Myerson-Taylor Structure-Aware Graph Explainer (MAGE), a novel explainer that uses the second-order Myerson-Taylor index to identify the most important motifs influencing the model prediction, both positively and negatively. Extensive experiments on various graph datasets and models demonstrate that our method consistently provides superior subgraph explanations compared to state-of-the-art methods.
Ask about this paper
Your agent reads all of it.
Lune indexed this paper to the last equation, along with the top-tier papers that cite it. Ask a question and the answer quotes them.
Your agent calls
Luneget_paper_fulltext
Free to start. No credit card required.
Terminal
Install the CLIlune papers fulltext 30c1e4f2-d260-45d8-b8a9-8fd774bde28dCited by top-tier papers3
- Exact Computation of Any-Order Shapley Interactions for Graph Neural NetworksMaximilian Muschalik, Fabian Fumagalli, Paolo Frazzetto, Janine Strotherm et al.ICLR 2025
- Learning Graph Invariance by Harnessing SpuriosityTianjun Yao, Yongqiang Chen, Kai Hu, Tongliang Liu et al.ICLR 2025
- TopInG: Topologically Interpretable Graph Learning via Persistent Rationale FiltrationCheng Xin, Fan Xu, Xin Ding, Jie Gao et al.ICML 2025
Builds on21
- An Image is Worth 16x16 Words: Transformers for Image Recognition at ScaleAlexey Dosovitskiy, Lucas Beyer, Alexander Kolesnikov, Dirk Weissenborn et al.ICLR 2021 · 21,477 citations
- Parameterized Explainer for Graph Neural NetworkDongsheng Luo, Wei Cheng, Dongkuan Xu, Wenchao Yu et al.NeurIPS 2020 · 888 citations
- Vision GNN: An Image is Worth Graph of NodesKai Han, Yunhe Wang, Jianyuan Guo, Yehui Tang et al.NeurIPS 2022 · 668 citations
- On Explainability of Graph Neural Networks via Subgraph ExplorationsHao Yuan, Haiyang Yu, Jie Wang, Kang Li et al.ICML 2021 · 498 citations
- Discovering Invariant Rationales for Graph Neural NetworksYingxin Wu, Xiang Wang, An Zhang, Xiangnan He et al.ICLR 2022 · 313 citations
Related papers
- GStarX: Explaining Graph Neural Networks with Structure-Aware Cooperative GamesShichang Zhang, Yozen Liu, Neil Shah, Yizhou SunNeurIPS 2022 · 79 citations
- MAGE: Model-Level Graph Neural Networks Explanations via Motif-based Graph GenerationZhaoning Yu, Hongyang GaoICLR 2025
- SAME: Uncovering GNN Black Box with Structure-aware Shapley-based Multipiece ExplanationsZiyuan Ye, Rihan Huang, Qilin Wu, Quanying LiuNeurIPS 2023 · 13 citations
- TN-SHAP-G: Graph-Structured Tensor Network Surrogates for Shapley Values and InteractionsFarzaneh Heidari, Guillaume RabusseauICML 2026
- GNNShap: Scalable and Accurate GNN Explanation using Shapley ValuesSelahattin Akkas, Ariful AzadWWW 2024 · 31 citations
