SAME: Uncovering GNN Black Box with Structure-aware Shapley-based Multipiece Explanations
Ziyuan Ye, Rihan Huang, Qilin Wu, Quanying Liu
Abstract
Post-hoc explanation techniques on graph neural networks (GNNs) provide economical solutions for opening the black-box graph models without model retraining. Many GNN explanation variants have achieved state-of-the-art explaining results on a diverse set of benchmarks, while they rarely provide theoretical analysis for their inherent properties and explanatory capability. In this work, we propose Structure-Aware Shapley-based Multipiece Explanation (SAME) method to address the structure-aware feature interactions challenges for GNNs explanation. Specifically, SAME leverages an expansion-based Monte Carlo tree search to explore the multi-grained structure-aware connected substructure. Afterward, the explanation results are encouraged to be informative of the graph properties by optimizing the combination of distinct single substructures. With the consideration of fair feature interactions in the process of investigating multiple connected important substructures, the explanation provided by SAME has the potential to be as explainable as the theoretically optimal explanation obtained by the Shapley value within polynomial time. Extensive experiments on real-world and synthetic benchmarks show that SAME improves the previous state-of-the-art fidelity performance by 12.9% on BBBP, 7.01% on MUTAG, 42.3% on Graph-SST2, 38.9% on Graph-SST5, 11.3% on BA-2Motifs and 18.2% on BA-Shapes under the same testing condition. Code is available at https://github.com/same2023neurips/same .
Ask about this paper
Your agent reads all of it.
Lune indexed this paper to the last equation, along with the top-tier papers that cite it. Ask a question and the answer quotes them.
Your agent calls
Luneget_paper_fulltext
Free to start. No credit card required.
Terminal
Install the CLIlune papers fulltext 9febe55d-ba2e-4065-ad51-bf19ba566413Cited by top-tier papers6
- Explaining Graph Neural Networks via Structure-aware Interaction IndexNgoc Bui, Hieu Trung Nguyen, Viet Anh Nguyen, Rex YingICML 2024 · 16 citations
- EiG-Search: Generating Edge-Induced Subgraphs for GNN Explanation in Linear TimeShengyao Lu, Bang Liu, Keith G. Mills, Jiao He et al.ICML 2024 · 7 citations
- SliceGX: Layer-wise GNN Explanation with Model-slicingCibo Yu, Tingting Zhu, Tingyang Chen, Yinghui Wu et al.WWW 2026 · 3 citations
- PL4XGL: A Programming Language Approach to Explainable Graph LearningMinseok Jeon, Jihyeok Park, Hakjoo OhPLDI 2024 · 2 citations
- Interpreting Graph Inference with Skyline ExplanationsDazhuo Qiu, Haolai Che, Arijit Khan, Yinghui WuICDE 2026 · 1 citation
Builds on12
- Parameterized Explainer for Graph Neural NetworkDongsheng Luo, Wei Cheng, Dongkuan Xu, Wenchao Yu et al.NeurIPS 2020 · 888 citations
- On Explainability of Graph Neural Networks via Subgraph ExplorationsHao Yuan, Haiyang Yu, Jie Wang, Kang Li et al.ICML 2021 · 498 citations
- Understanding Global Feature Contributions With Additive Importance MeasuresIan Covert, Scott M. Lundberg, Su-In LeeNeurIPS 2020 · 476 citations
- Problems with Shapley-value-based explanations as feature importance measuresI. Elizabeth Kumar, Suresh Venkatasubramanian, Carlos Scheidegger, Sorelle A. FriedlerICML 2020 · 458 citations
- PGM-Explainer: Probabilistic Graphical Model Explanations for Graph Neural NetworksMinh N. Vu, My T. ThaiNeurIPS 2020 · 437 citations
Related papers
- GStarX: Explaining Graph Neural Networks with Structure-Aware Cooperative GamesShichang Zhang, Yozen Liu, Neil Shah, Yizhou SunNeurIPS 2022 · 79 citations
- Stratified GNN Explanations through Sufficient ExpansionYuwen Ji, Lei Shi, Zhimeng Liu, Ge WangAAAI 2024 · 6 citations
- GNNShap: Scalable and Accurate GNN Explanation using Shapley ValuesSelahattin Akkas, Ariful AzadWWW 2024 · 31 citations
- DEGREE: Decomposition Based Explanation for Graph Neural NetworksQizhang Feng, Ninghao Liu, Fan Yang, Ruixiang Tang et al.ICLR 2022 · 33 citations
- Multi-scale Explainer for Graph Neural NetworksLutong Wu, Shiying Cheng, Zhiqiang Wang, Jianqing Liang et al.ICML 2026
