I Have Covered All the Bases Here: Interpreting Reasoning Features in Large Language Models via Sparse Autoencoders

Recent LLMs like DEEPSEEK-R1 have demonstrated state-of-the-art performance by integrating deep thinking and complex reasoning during generation. However, the internal mechanisms behind these reasoning processes remain unexplored. We observe reasoning LLMs consistently use vocabulary associated with human reasoning processes. We hypothesize these words correspond to specific reasoning moments within the models' internal mechanisms. To test this hypothesis, we employ Sparse Autoencoders (SAEs), a technique for sparse decomposition of neural network activations into human-interpretable features. We introduce ReasonScore, an automatic metric to identify active SAE features during these reasoning moments. We perform manual and automatic interpretation of the features detected by our metric, and find those with activation patterns matching uncertainty, exploratory thinking, and reflection. Through steering experiments, we demonstrate that amplifying these features increases performance on reasoningintensive benchmarks (+2.2%) while producing longer reasoning traces (+20.5%). Using the model diffing technique, we provide evidence that these features are present only in models with reasoning capabilities. Our work provides the first step towards a mechanistic understanding of reasoning in LLMs. 1