MetaGL: Evaluation-Free Selection of Graph Learning Models via Meta-Learning
Namyong Park, Ryan A. Rossi, Nesreen K. Ahmed, Christos Faloutsos
Abstract
Given a graph learning task, such as link prediction, on a new graph, how can we select the best method as well as its hyperparameters (collectively called a model) without having to train or evaluate any model on the new graph? Model selection for graph learning has been largely ad hoc. A typical approach has been to apply popular methods to new datasets, but this is often suboptimal. On the other hand, systematically comparing models on the new graph quickly becomes too costly, or even impractical. In this work, we develop the first meta-learning approach for evaluation-free graph learning model selection, called MetaGL, which utilizes the prior performances of existing methods on various benchmark graph datasets to automatically select an effective model for the new graph, without any model training or evaluations. To quantify similarities across a wide variety of graphs, we introduce specialized meta-graph features that capture the structural characteristics of a graph. Then we design G-M network, which represents the relations among graphs and models, and develop a graph-based meta-learner operating on this G-M network, which estimates the relevance of each model to different graphs. Extensive experiments show that using MetaGL to select a model for the new graph greatly outperforms several existing meta-learning techniques tailored for graph learning model selection (up to 47% better), while being extremely fast at test time ( 1 sec).
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Cited by top-tier papers3
- Towards Robust Multi-Modal Reasoning via Model SelectionXiangyan Liu, Rongxue Li, Wei Ji, Tao LinICLR 2024 · 9 citations
- Relatron: Automating Relational Machine Learning over Relational DatabasesZhikai Chen, Han Xie, Jian Zhang, Jiliang Tang et al.ICLR 2026 · 2 citations
- MetaOOD: Automatic Selection of OOD Detection ModelsYuehan Qin, Yichi Zhang, Yi Nian, Xueying Ding et al.ICLR 2025
Builds on5
- Design Space for Graph Neural NetworksJiaxuan You, Zhitao Ying, Jure LeskovecNeurIPS 2020 · 409 citations
- Self-supervised Graph-level Representation Learning with Local and Global StructureMinghao Xu, Hang Wang, Bingbing Ni, Hongyu Guo et al.ICML 2021 · 248 citations
- Automatic Unsupervised Outlier Model SelectionYue Zhao, Ryan A. Rossi, Leman AkogluNeurIPS 2021 · 104 citations
- Policy-GNN: Aggregation Optimization for Graph Neural NetworksKwei-Herng Lai, Daochen Zha, Kaixiong Zhou, Xia HuKDD 2020 · 87 citations
- MultiImport: Inferring Node Importance in a Knowledge Graph from Multiple Input SignalsNamyong Park, Andrey Kan, Xin Luna Dong, Tong Zhao et al.KDD 2020 · 22 citations
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