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PrefillOnly: An Inference Engine for Prefill-only Workloads in Large Language Model Applications

Kuntai Du, Bowen Wang, Chen Zhang, Yiming Cheng, Qing Lan, Hejian Sang, Yihua Cheng, Jiayi Yao, Xiaoxuan Liu, Yifan Qiao, Ion Stoica, Junchen Jiang

2025Year
3Citations
4Top-tier citations

Abstract

Besides typical generative applications, like ChatGPT, GitHub Copilot, and Cursor, we observe an emerging trend that LLMs are increasingly used in traditional discriminative tasks, such as recommendation, credit verification, and data labeling. The key characteristic of these emerging use cases is that the LLM generates only a single output token, rather than an arbitrarily long sequence of tokens. We refer to this as a prefill-only workload. However, since existing LLM engines assume arbitrary output lengths, they fail to leverage the unique properties of prefill-only workloads. In this paper, we present PrefillOnly, the first LLM inference engine that improves the inference throughput and latency by fully embracing the properties of prefill-only workloads. First, since it generates only one token, PrefillOnly only needs to store the KV cache of only the last computed layer, rather than of all layers. This drastically reduces the GPU memory footprint of LLM inference and allows handling long inputs without using solutions that reduce throughput, such as cross-GPU KV cache parallelization. Second, because the output length is fixed, rather than arbitrary, PrefillOnly can precisely determine the job completion time (JCT) of each prefill-only request before it starts. This enables efficient JCT-aware scheduling policies such as shortest prefill first. PrefillOnly can process up to 4× larger queries per second without inflating the average and P99 latency.

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