ManyDG: Many-domain Generalization for Healthcare Applications
Chaoqi Yang, M. Brandon Westover, Jimeng Sun
Abstract
The vast amount of health data has been continuously collected for each patient, providing opportunities to support diverse healthcare predictive tasks such as seizure detection and hospitalization prediction. Existing models are mostly trained on other patients' data and evaluated on new patients. Many of them might suffer from poor generalizability. One key reason can be overfitting due to the unique information related to patient identities and their data collection environments, referred to as patient covariates in the paper. These patient covariates usually do not contribute to predicting the targets but are often difficult to remove. As a result, they can bias the model training process and impede generalization. In healthcare applications, most existing domain generalization methods assume a small number of domains. In this paper, considering the diversity of patient covariates, we propose a new setting by treating each patient as a separate domain (leading to many domains). We develop a new domain generalization method ManyDG 1 , that can scale to such many-domain problems. Our method identifies the patient domain covariates by mutual reconstruction, and removes them via an orthogonal projection step. Extensive experiments show that ManyDG can boost the generalization performance on multiple real-world healthcare tasks (e.g., 3.7% Jaccard improvements on MIMIC drug recommendation) and support realistic but challenging settings such as insufficient data and continuous learning.
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Cited by top-tier papers6
- BIOT: Biosignal Transformer for Cross-data Learning in the WildChaoqi Yang, M. Brandon Westover, Jimeng SunNeurIPS 2023 · 345 citations
- Medformer: A Multi-Granularity Patching Transformer for Medical Time-Series ClassificationYihe Wang, Nan Huang, Taida Li, Yujun Yan et al.NeurIPS 2024 · 158 citations
- Contrast Everything: A Hierarchical Contrastive Framework for Medical Time-SeriesYihe Wang, Yu Han, Haishuai Wang, Xiang ZhangNeurIPS 2023 · 106 citations
- PPi: Pretraining Brain Signal Model for Patient-independent Seizure DetectionZhizhang Yuan, Daoze Zhang, Yang Yang, Junru Chen et al.NeurIPS 2023 · 16 citations
- An Iterative Self-Learning Framework for Medical Domain GeneralizationZhenbang Wu, Huaxiu Yao, David M. Liebovitz, Jimeng SunNeurIPS 2023 · 12 citations
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- Bootstrap Your Own Latent - A New Approach to Self-Supervised LearningJean-Bastien Grill, Florian Strub, Florent Altché, Corentin Tallec et al.NeurIPS 2020 · 9,171 citations
- Supervised Contrastive LearningPrannay Khosla, Piotr Teterwak, Chen Wang, Aaron Sarna et al.NeurIPS 2020 · 7,049 citations
- Moment Matching for Multi-Source Domain AdaptationXingchao Peng, Qinxun Bai, Xide Xia, Zijun Huang et al.ICCV 2019 · 2,239 citations
- WILDS: A Benchmark of in-the-Wild Distribution ShiftsPang Wei Koh, Shiori Sagawa, Henrik Marklund, Sang Michael Xie et al.ICML 2021 · 1,773 citations
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