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EMNLP Findings2024

Augmenting Black-box LLMs with Medical Textbooks for Biomedical Question Answering

Yubo Wang, Xueguang Ma, Wenhu Chen

Abstract

Large Language Models (LLMs) like ChatGPT have demonstrated impressive abilities in generating responses based on human instructions. However, their use in the medical field can be challenging due to their lack of specific, indepth knowledge. In this study, we present a system called LLMs Augmented with Medical Textbooks (LLM-AMT) designed to enhance the proficiency of LLMs in specialized domains. LLM-AMT integrates authoritative medical textbooks into the LLMs' framework using plug-and-play modules. These modules include a Query Augmenter, a Hybrid Textbook Retriever, and a Knowledge Self-Refiner. Together, they incorporate authoritative medical knowledge. Additionally, an LLM Reader aids in contextual understanding. Our experimental results on three medical QA tasks demonstrate that LLM-AMT significantly improves response quality, with accuracy gains ranging from 11.6% to 16.6%. Notably, with GPT-4-Turbo as the base model, LLM-AMT outperforms the specialized Med-PaLM 2 model pretrained on a massive amount of medical corpus by 2-3%. We found that despite being 100× smaller in size, medical textbooks as a retrieval corpus are proven to be a more effective knowledge database than Wikipedia in the medical domain, boosting performance by 7.8%-13.7%.

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Cited by top-tier papers4

  1. DrHouse: An LLM-empowered Diagnostic Reasoning System through Harnessing Outcomes from Sensor Data and Expert KnowledgeBufang Yang, Siyang Jiang, Lilin Xu, Kaiwei Liu et al.UbiComp 2025 · 60 citations
  2. Med-R2: Crafting Trustworthy LLM Physicians via Retrieval and Reasoning of Evidence-Based MedicineKeer Lu, Zheng Liang, Da Pan, Shusen Zhang et al.WWW 2026 · 5 citations
  3. Towards Explainable Diagnosis: A Self-learned Explanatory Knowledge Base ApproachDongqi Huang, Tong Zhou, Zhuoran Jin, Shenghui Shi et al.ACL 2026
  4. Towards Omni-RAG: Comprehensive Retrieval-Augmented Generation for Large Language Models in Medical ApplicationsZhe Chen, Yusheng Liao, Shuyang Jiang, Pingjie Wang et al.ACL 2025

Builds on15

  1. Retrieval-Augmented Generation for Knowledge-Intensive NLP TasksPatrick Lewis, Ethan Perez, Aleksandra Piktus, Fabio Petroni et al.NeurIPS 2020 · 19,162 citations
  2. Toolformer: Language Models Can Teach Themselves to Use ToolsTimo Schick, Jane Dwivedi-Yu, Roberto Dessì, Roberta Raileanu et al.NeurIPS 2023 · 5,989 citations
  3. Retrieval Augmented Language Model Pre-TrainingKelvin Guu, Kenton Lee, Zora Tung, Panupong Pasupat et al.ICML 2020 · 2,937 citations
  4. Self-RAG: Learning to Retrieve, Generate, and Critique through Self-ReflectionAkari Asai, Zeqiu Wu, Yizhong Wang, Avirup Sil et al.ICLR 2024 · 1,798 citations
  5. Improving Language Models by Retrieving from Trillions of TokensSebastian Borgeaud, Arthur Mensch, Jordan Hoffmann, Trevor Cai et al.ICML 2022 · 1,629 citations

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  2. SeRTS: Self-Rewarding Tree Search for Biomedical Retrieval-Augmented GenerationMinda Hu, Licheng Zong, Hongru Wang, Jingyan Zhou et al.EMNLP Findings 2024 · 6 citations
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