Discrepancy-Aware Graph Mask Auto-Encoder
Ziyu Zheng, Yaming Yang, Ziyu Guan, Wei Zhao, Weigang Lu
Abstract
Masked Graph Auto-Encoder, a powerful graph self-supervised training paradigm, has recently shown superior performance in graph representation learning. Existing works typically rely on node contextual information to recover the masked information. However, they fail to generalize well to heterophilic graphs where connected nodes may be not similar, because they focus only on capturing the neighborhood information and ignoring the discrepancy information between different nodes, resulting in indistinguishable node representations. In this paper, to address this issue, we propose a Discrepancy-Aware Graph Mask Auto-Encoder (DGMAE). It obtains more distinguishable node representations by reconstructing the discrepancy information of neighboring nodes during the masking process. We conduct extensive experiments on 17 widely-used benchmark datasets. The results show that our DGMAE can effectively preserve the discrepancies of nodes in low-dimensional space. Moreover, DGMAE significantly outperforms state-of-the-art graph self-supervised learning methods on three graph analytic including tasks node classification, node clustering, and graph classification, demonstrating its remarkable superiority. The code of DGMAE is available at https://github.com/zhengziyu77/DGMAE.
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Cited by top-tier papers2
- Graph Navier-Stokes NetworksZexing Zhao, Guangsi Shi, Yu Gong, Tianyu Wang et al.KDD 2026
- Reconstruction Outcomes Look Similar but Processes Differ: Improving Context Consistency and Coverage in Graph Masked Auto-EncoderGeng Tang, Keyu Liu, Xibei Yang, Yuhua QianICML 2026
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- Beyond Homophily in Graph Neural Networks: Current Limitations and Effective DesignsJiong Zhu, Yujun Yan, Lingxiao Zhao, Mark Heimann et al.NeurIPS 2020 · 1,490 citations
- Geom-GCN: Geometric Graph Convolutional NetworksHongbin Pei, Bingzhe Wei, Kevin Chen-Chuan Chang, Yu Lei et al.ICLR 2020 · 1,445 citations
- Graph Contrastive Learning with Adaptive AugmentationYanqiao Zhu, Yichen Xu, Feng Yu, Qiang Liu et al.WWW 2021 · 1,415 citations
- GraphSAINT: Graph Sampling Based Inductive Learning MethodHanqing Zeng, Hongkuan Zhou, Ajitesh Srivastava, Rajgopal Kannan et al.ICLR 2020 · 1,155 citations
- InfoGraph: Unsupervised and Semi-supervised Graph-Level Representation Learning via Mutual Information MaximizationFan-Yun Sun, Jordan Hoffmann, Vikas Verma, Jian TangICLR 2020 · 1,010 citations
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