RetroOOD: Understanding Out-of-Distribution Generalization in Retrosynthesis Prediction
Yemin Yu, Luotian Yuan, Ying Wei, Hanyu Gao, Fei Wu, Zhihua Wang, Xinhai Ye
摘要
Machine learning-assisted retrosynthesis prediction models have been gaining widespread adoption, though their performances oftentimes degrade significantly when deployed in real-world applications embracing out-of-distribution (OOD) molecules or reactions. Despite steady progress on standard benchmarks, our understanding of existing retrosynthesis prediction models under the premise of distribution shifts remains stagnant. To this end, we first formally sort out two types of distribution shifts in retrosynthesis prediction and construct two groups of benchmark datasets. Next, through comprehensive experiments, we systematically compare state-of-the-art retrosynthesis prediction models on the two groups of benchmarks, revealing the limitations of previous in-distribution evaluation and re-examining the advantages of each model. More remarkably, we are motivated by the above empirical insights to propose two model-agnostic techniques that can improve the OOD generalization of arbitrary off-the-shelf retrosynthesis prediction algorithms. Our preliminary experiments show their high potential with an average performance improvement of 4.6%, and the established benchmarks serve as a foothold for further retrosynthesis prediction research towards OOD generalization.
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引用它的顶会 Paper2
- Preference Optimization for Molecule Synthesis with Conditional Residual Energy-based ModelsSongtao Liu, Hanjun Dai, Yue Zhao, Peng LiuICML 2024 · 被引用 8 次
- Active Retrosynthetic Planning Aware of Route QualityLuotian Yuan, Yemin Yu, Ying Wei, Yongwei Wang 等ICLR 2024 · 被引用 3 次
它引用的顶会 Paper8
- Energy-based Out-of-distribution DetectionWeitang Liu, Xiaoyun Wang, John D. Owens, Yixuan LiNeurIPS 2020 · 被引用 2,213 次
- WILDS: A Benchmark of in-the-Wild Distribution ShiftsPang Wei Koh, Shiori Sagawa, Henrik Marklund, Sang Michael Xie 等ICML 2021 · 被引用 1,773 次
- Your classifier is secretly an energy based model and you should treat it like oneWill Grathwohl, Kuan-Chieh Wang, Jörn-Henrik Jacobsen, David Duvenaud 等ICLR 2020 · 被引用 643 次
- Hopfield Networks is All You NeedHubert Ramsauer, Bernhard Schäfl, Johannes Lehner, Philipp Seidl 等ICLR 2021 · 被引用 620 次
- A Graph to Graphs Framework for Retrosynthesis PredictionChence Shi, Minkai Xu, Hongyu Guo, Ming Zhang 等ICML 2020 · 被引用 176 次
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