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Haste Makes Waste: A Simple Approach for Scaling Graph Neural Networks

Rui Xue, Tong Zhao, Neil Shah, Xiaorui Liu

2025Year

Abstract

Graph neural networks (GNNs) have demonstrated remarkable success in graph representation learning, and various sampling approaches have been proposed to scale GNNs to applications with large-scale graphs. A class of promising GNN training algorithms take advantage of historical embeddings to reduce the computation and memory cost while maintaining the model expressiveness of GNNs. However, they incur significant computation bias due to the stale feature history. In this paper, we provide a comprehensive analysis of their staleness and inferior performance on large-scale problems. Motivated by our discoveries, we propose a simple yet highly effective training algorithm (REST) to effectively reduce feature staleness, which leads to significantly improved performance and convergence across varying batch sizes. The proposed algorithm seamlessly integrates with existing solutions, boasting easy implementation, while comprehensive experiments underscore its superior performance and efficiency on large-scale benchmarks. Specifically, our improvements to state-of-theart historical embedding methods result in a 2.7% and 3.6% performance enhancement on the ogbn-papers100M and ogbnproducts dataset respectively, accompanied by notably accelerated convergence.

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