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EMNLP Findings2024

HyperBERT: Mixing Hypergraph-Aware Layers with Language Models for Node Classification on Text-Attributed Hypergraphs

Adrián Bazaga, Pietro Lio, Gos Micklem

Abstract

Hypergraphs are characterized by complex topological structure, representing higher-order interactions among multiple entities through hyperedges. Lately, hypergraph-based deep learning methods to learn informative data representations for the problem of node classification on textattributed hypergraphs have garnered increasing research attention. However, existing methods struggle to simultaneously capture the full extent of hypergraph structural information and the rich linguistic attributes inherent in the nodes attributes, which largely hampers their effectiveness and generalizability. To overcome these challenges, we explore ways to further augment a pretrained BERT model with specialized hypergraph-aware layers for the task of node classification. Such layers introduce higher-order structural inductive bias into the language model, thus improving the model's capacity to harness both higher-order context information from the hypergraph structure and semantic information present in text. In this paper, we propose a new architecture, HyperBERT, a mixed text-hypergraph model which simultaneously models hypergraph relational structure while maintaining the high-quality text encoding capabilities of a pre-trained BERT. Notably, Hy-perBERT presents results that achieve a new stateof-the-art on five challenging text-attributed hypergraph node classification benchmarks.

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Cited by top-tier papers3

  1. HYPER: A Foundation Model for Inductive Link Prediction with Knowledge HypergraphsXingyue Huang, Mikhail Galkin, Michael M. Bronstein, Ismail Ilkan CeylanICLR 2026 · 12 citations
  2. How Particle System Theory Enhances Hypergraph Message PassingYixuan Ma, Kai Yi, Pietro Lió, Shi Jin et al.NeurIPS 2025
  3. SuperHype: Hypergraph Generation via Graph-Superposition DecompositionLucas Gantes, Abele Mălan, Roberto Gheda, Robert Birke et al.ICML 2026

Builds on17

  1. Open Graph Benchmark: Datasets for Machine Learning on GraphsWeihua Hu, Matthias Fey, Marinka Zitnik, Yuxiao Dong et al.NeurIPS 2020 · 3,935 citations
  2. K-BERT: Enabling Language Representation with Knowledge GraphWeijie Liu, Peng Zhou, Zhe Zhao, Zhiruo Wang et al.AAAI 2020 · 898 citations
  3. ELECTRA: Pre-training Text Encoders as Discriminators Rather Than GeneratorsKevin Clark, Minh-Thang Luong, Quoc V. Le, Christopher D. ManningICLR 2020 · 541 citations
  4. Next-item Recommendation with Sequential HypergraphsJianling Wang, Kaize Ding, Liangjie Hong, Huan Liu et al.SIGIR 2020 · 284 citations
  5. GraphFormers: GNN-nested Transformers for Representation Learning on Textual GraphJunhan Yang, Zheng Liu, Shitao Xiao, Chaozhuo Li et al.NeurIPS 2021 · 262 citations

Related papers

  1. Instruction-based Hypergraph PretrainingMingdai Yang, Zhiwei Liu, Liangwei Yang, Xiaolong Liu et al.SIGIR 2024 · 4 citations
  2. CaN: A Core-aware Neural Framework for Attributed Hypergraph GenerationXiangfei Fang, Ran Bao, Heng ZhangKDD 2026
  3. Be More with Less: Hypergraph Attention Networks for Inductive Text ClassificationKaize Ding, Jianling Wang, Jundong Li, Dingcheng Li et al.EMNLP 2020 · 210 citations
  4. Unleashing the Power of Language Models in Text-Attributed GraphHaoyu Kuang, Jiarong Xu, Haozhe Zhang, Zuyu Zhao et al.EMNLP Findings 2023 · 2 citations
  5. Defining and Discovering Hyper-meta-paths for Heterogeneous HypergraphsYaming Yang, Ziyu Zheng, Weigang Lu, Zhe Wang et al.NeurIPS 2025
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