Capacity and Bias of Learned Geometric Embeddings for Directed Graphs
Michael Boratko, Dongxu Zhang, Nicholas Monath, Luke Vilnis, Kenneth L. Clarkson, Andrew McCallum
Abstract
A wide variety of machine learning tasks such as knowledge base completion, ontology alignment, and multi-label classification can benefit from incorporating into learning differentiable representations of graphs or taxonomies. While vectors in Euclidean space can theoretically represent any graph, much recent work shows that alternatives such as complex, hyperbolic, order, or box embeddings have geometric properties better suited to modeling real-world graphs. Experimentally these gains are seen only in lower dimensions, however, with performance benefits diminishing in higher dimensions. In this work, we introduce a novel variant of box embeddings that uses a learned smoothing parameter to achieve better representational capacity than vector models in low dimensions, while also avoiding performance saturation common to other geometric models in high dimensions. Further, we present theoretical results that prove box embeddings can represent any DAG. We perform rigorous empirical evaluations of vector, hyperbolic, and region-based geometric representations on several families of synthetic and realworld directed graphs. Analysis of these results exposes correlations between different families of graphs, graph characteristics, model size, and embedding geometries, providing useful insights into inductive biases of various differentiable graph representations.
Ask about this paper
Your agent reads all of it.
Lune indexed this paper to the last equation, along with the top-tier papers that cite it. Ask a question and the answer quotes them.
Your agent calls
Luneget_paper_fulltext
Free to start. No credit card required.
Terminal
Install the CLIlune papers fulltext c349d5dc-e338-4669-b579-b09fdd4b34f1Cited by top-tier papers8
- GammaE: Gamma Embeddings for Logical Queries on Knowledge GraphsDong Yang, Peijun Qing, Yang Li, Haonan Lu et al.EMNLP 2022 · 14 citations
- Modeling Transitivity and Cyclicity in Directed Graphs via Binary Code Box EmbeddingsDongxu Zhang, Michael Boratko, Cameron Musco, Andrew McCallumNeurIPS 2022 · 8 citations
- Exact Representation of Sparse Networks with Symmetric Nonnegative EmbeddingsSudhanshu Chanpuriya, Ryan A. Rossi, Anup B. Rao, Tung Mai et al.NeurIPS 2023 · 5 citations
- Shadow Cones: A Generalized Framework for Partial Order EmbeddingsTao Yu, Toni J. B. Liu, Albert Tseng, Christopher De SaICLR 2024 · 3 citations
- Learning Representations for Hierarchies with Minimal SupportBenjamin Rozonoyer, Michael Boratko, Dhruvesh Patel, Wenlong Zhao et al.NeurIPS 2024 · 1 citation
Builds on6
- Hyperbolic Neural Networks++Ryohei Shimizu, Yusuke Mukuta, Tatsuya HaradaICLR 2021 · 791 citations
- From Trees to Continuous Embeddings and Back: Hyperbolic Hierarchical ClusteringInes Chami, Albert Gu, Vaggos Chatziafratis, Christopher RéNeurIPS 2020 · 125 citations
- Mixed-curvature Variational AutoencodersOndrej Skopek, Octavian-Eugen Ganea, Gary BécigneulICLR 2020 · 122 citations
- Improving Local Identifiability in Probabilistic Box EmbeddingsShib Sankar Dasgupta, Michael Boratko, Dongxu Zhang, Luke Vilnis et al.NeurIPS 2020 · 75 citations
- Low-Dimensional Hyperbolic Knowledge Graph EmbeddingsInes Chami, Adva Wolf, Da-Cheng Juan, Frederic Sala et al.ACL 2020 · 48 citations
Related papers
- Binder: Hierarchical Concept Representation through Order Embedding of Binary VectorsCroix Gyurek, Niloy Talukder, Mohammad Al HasanKDD 2024
- Geometry Interaction Knowledge Graph EmbeddingsZongsheng Cao, Qianqian Xu, Zhiyong Yang, Xiaochun Cao et al.AAAI 2022 · 81 citations
- Dual-Geometric Space Embedding Model for Two-View Knowledge GraphsRoshni G. Iyer, Yunsheng Bai, Wei Wang, Yizhou SunKDD 2022 · 17 citations
- Bridging the Space Gap: Unifying Geometry Knowledge Graph Embedding with Optimal TransportYuhan Liu, Zelin Cao, Xing Gao, Ji Zhang et al.WWW 2024 · 11 citations
- Weighted Embeddings for Low-Dimensional Graph RepresentationThomas Bläsius, Jean-Pierre von der Heydt, Maximilian Katzmann, Nikolai MaasAAAI 2025 · 1 citation
