RuCCoD: Towards Automated ICD Coding in Russian
Alexandr Nesterov, Andrey Sakhovskiy, Ivan Sviridov, Airat Valiev, Vladimir Makharev, Petr Anokhin, Galina Zubkova, Elena Tutubalina
Abstract
This study investigates the feasibility of automating clinical coding in Russian, a language with limited biomedical resources. We present a new dataset for ICD coding, which includes diagnosis fields from electronic health records (EHRs) annotated with over 10,000 entities and more than 1,500 unique ICD codes. This dataset serves as a benchmark for several stateof-the-art models, including BERT, LLaMA with LoRA, and RAG, with additional experiments examining transfer learning across domains (from PubMed abstracts to medical diagnosis) and terminologies (from UMLS concepts to ICD codes). We then apply the bestperforming model to label an in-house EHR dataset containing patient histories from 2017 to 2021. Our experiments, conducted on a carefully curated test set, demonstrate that training with the automated predicted codes leads to a significant improvement in accuracy compared to manually annotated data from physicians. We believe our findings offer valuable insights into the potential for automating clinical coding in resource-limited languages like Russian, which could enhance clinical efficiency and data accuracy in these contexts. Our code and dataset are available at https: //github.com/auto-icd-coding/ruccod .
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Builds on9
- LoRA: Low-Rank Adaptation of Large Language ModelsEdward J. Hu, Yelong Shen, Phillip Wallis, Zeyuan Allen-Zhu et al.ICLR 2022 · 18,833 citations
- ICD Coding from Clinical Text Using Multi-Filter Residual Convolutional Neural NetworkFei Li, Hong YuAAAI 2020 · 201 citations
- Biomedical Entity Representations with Synonym MarginalizationMujeen Sung, Hwisang Jeon, Jinhyuk Lee, Jaewoo KangACL 2020 · 134 citations
- HyperCore: Hyperbolic and Co-graph Representation for Automatic ICD CodingPengfei Cao, Yubo Chen, Kang Liu, Jun Zhao et al.ACL 2020 · 104 citations
- Context-Aware Health Event Prediction via Transition Functions on Dynamic Disease GraphsChang Lu, Tian Han, Yue NingAAAI 2022 · 67 citations
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