Are Humans and LLMs Confused by the Same Code? An Empirical Study on Fixation-Related Potentials and LLM Perplexity

Already today, humans and programming assistants based on large language models (LLMs) collaborate in everyday programming tasks. Clearly, a misalignment between how LLMs and programmers comprehend code can lead to misunderstandings, inefficiencies, low code quality, and bugs. A key question in this space is whether humans and LLMs are confused by the same kind of code. This would not only guide our choices of integrating LLMs in software engineering workflows but also inform about possible improvements of LLMs. To this end, we conducted an empirical study comparing an LLM to human programmers comprehending clean and confusing code. We operationalized comprehension for the LLM by using LLM perplexity, and for human programmers using neurophysiological responses (in particular, EEG-based fixation-related potentials). We found that LLM perplexity spikes correlate, both in terms of location and amplitude, with human neurophysiological responses that indicate confusion. This result suggests that LLMs and humans are similarly confused about the code. Based on these findings, we devised a data-driven, LLM-based approach to identify regions of confusion in code that elicit confusion in human programmers.