Effective Causal Discovery under Identifiable Heteroscedastic Noise Model
Naiyu Yin, Tian Gao, Yue Yu, Qiang Ji
Abstract
Capturing the underlying structural causal relations represented by Directed Acyclic Graphs (DAGs) has been a fundamental task in various AI disciplines. Causal DAG learning via the continuous optimization framework has recently achieved promising performance in terms of both accuracy and efficiency. However, most methods make strong assumptions of homoscedastic noise, i.e., exogenous noises have equal variances across variables, observations, or even both. The noises in real data usually violate both assumptions due to the biases introduced by different data collection processes. To address the issue of heteroscedastic noise, we introduce relaxed and implementable sufficient conditions, proving the identifiability of a general class of SEM subject to these conditions. Based on the identifiable general SEM, we propose a novel formulation for DAG learning that accounts for the variation in noise variance across variables and observations. We then propose an effective two-phase iterative DAG learning algorithm to address the increasing optimization difficulties and to learn a causal DAG from data with heteroscedastic variable noise under varying variance. We show significant empirical gains of the proposed approaches over state-of-theart methods on both synthetic data and real data. Our implementation: https://github.com/naiyuyin/ICDH .
Ask about this paper
Your agent reads all of it.
Lune indexed this paper to the last equation, along with the top-tier papers that cite it. Ask a question and the answer quotes them.
Your agent calls
Luneget_paper_fulltext
Free to start. No credit card required.
Terminal
Install the CLIlune papers fulltext 940d6e0d-33b1-4c67-a6db-226bf9b176ebCited by top-tier papers3
- Moment Matters: Mean and Variance Causal Graph Discovery from Heteroscedastic Observational DataYoichi ChikaharaKDD 2026 · 1 citation
- Meta-D2AG: Causal Graph Learning with Interventional Dynamic DataTian Gao, Songtao Lu, Junkyu Lee, Elliot Nelson et al.NeurIPS 2025
- A Skewness-Based Criterion for Addressing Heteroscedastic Noise in Causal DiscoveryYingyu Lin, Yuxing Huang, Wenqin Liu, Haoran Deng et al.ICLR 2025
Builds on6
- Invariance Principle Meets Information Bottleneck for Out-of-Distribution GeneralizationKartik Ahuja, Ethan Caballero, Dinghuai Zhang, Jean-Christophe Gagnon-Audet et al.NeurIPS 2021 · 372 citations
- Gradient-Based Neural DAG LearningSébastien Lachapelle, Philippe Brouillard, Tristan Deleu, Simon Lacoste-JulienICLR 2020 · 337 citations
- Beware of the Simulated DAG! Causal Discovery Benchmarks May Be Easy to GameAlexander G. Reisach, Christof Seiler, Sebastian WeichwaldNeurIPS 2021 · 213 citations
- On the Identifiability and Estimation of Causal Location-Scale Noise ModelsAlexander Immer, Christoph Schultheiss, Julia E. Vogt, Bernhard Schölkopf et al.ICML 2023 · 56 citations
- A polynomial-time algorithm for learning nonparametric causal graphsMing Gao, Yi Ding, Bryon AragamNeurIPS 2020 · 39 citations
Related papers
- Stabilizing Causal Structure Learning under Heteroscedasticity: Analysis and Mitigation of Optimization FailuresEunjung Choi, Seonggyeom Kim, Dong-Kyu ChaeKDD 2026
- CoLiDE: Concomitant Linear DAG EstimationSeyed Saman Saboksayr, Gonzalo Mateos, Mariano TepperICLR 2024 · 9 citations
- Boosting Causal Discovery via Adaptive Sample ReweightingAn Zhang, Fangfu Liu, Wenchang Ma, Zhibo Cai et al.ICLR 2023 · 4 citations
- Boosting Causal Structure Learning: An Asymmetric Exponential Modulation Gaussian-Based Adaptive Sample Reweighting FrameworkWei Xiao, Hongbin Wang, Ming He, Nianbin WangAAAI 2025
- DARING: Differentiable Causal Discovery with Residual IndependenceYue He, Peng Cui, Zheyan Shen, Renzhe Xu et al.KDD 2021 · 28 citations
