ACL Findings2025
GNN-RAG: Graph Neural Retrieval for Efficient Large Language Model Reasoning on Knowledge Graphs
Costas Mavromatis, George Karypis
Abstract
Retrieval-augmented generation (RAG) in Knowledge Graph Question Answering (KGQA) enhances the context of Large Language Models (LLMs) by incorporating information retrieved from the Knowledge Graph (KG). Most recent approaches rely on costly LLM calls to generate executable relation paths or traverse the KG, which is inefficient in complex KGQA tasks, such as those involving multi-hop or multi-entity questions.
We introduce the GNN-RAG framework, which utilizes lightweight Graph Neural Networks (GNNs) for effective and efficient graph retrieval. The GNN learns to assign importance weights to nodes based on their relevance to the question, as well as the relevance of their neighboring nodes. This enables the framework to effectively handle context from distant nodes in the graph, improving retrieval performance. GNN-RAG retrieves the shortest paths connecting question entities to GNN answer candidates, providing this information as context for the LLM. Experimental results show that GNN-RAG achieves effective retrieval on two widely used KGQA benchmarks (WebQSP and CWQ), outperforming or matching GPT-4 performance with a 7B tuned LLM. Additionally, GNN-RAG excels on multi-hop and multi-entity questions outperforming LLM-based retrieval approaches by 8.9-15.5% points at answer F1. Furthermore, it surpasses long-context inference while using 9× fewer KG tokens. The code is provided in https://github.com/cmavro/GNN-RAG.
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Cited by top-tier papers25
- G-reasoner: Foundation Models for Unified Reasoning over Graph-structured KnowledgeLinhao Luo, Zicheng Zhao, Junnan Liu, Zhangchi Qiu et al.ICLR 2026 · 12 citations
- Mixture-of-Experts Knowledge Graph Retrieval-Augmented Generation for Multi-Agent LLM-based RecommendationShijie Wang, Chengyi Liu, Yujuan Ding, Shanru Lin et al.KDD 2026 · 4 citations
- Explore-on-Graph: Incentivizing Autonomous Exploration of Large Language Models on Knowledge Graphs with Path-refined Reward ModelingShiqi Yan, Yubo Chen, Ruiqi Zhou, Zhengxi Yao et al.ICLR 2026 · 3 citations
- PathMind: A Retrieve-Prioritize-Reason Framework for Knowledge Graph Reasoning with Large Language ModelsYu Liu, Xixun Lin, Yanmin Shang, Yangxi Li et al.AAAI 2026 · 3 citations
- ChatHLS: Towards Systematic Design Automation and Optimization for High-Level SynthesisRunkai Li, Jia Xiong, Xiuyuan He, Jieru Zhao et al.ACL 2026 · 3 citations
Builds on32
- Language Models are Few-Shot LearnersTom B. Brown, Benjamin Mann, Nick Ryder, Melanie Subbiah et al.NeurIPS 2020 · 64,255 citations
- Chain-of-Thought Prompting Elicits Reasoning in Large Language ModelsJason Wei, Xuezhi Wang, Dale Schuurmans, Maarten Bosma et al.NeurIPS 2022 · 22,562 citations
- Retrieval-Augmented Generation for Knowledge-Intensive NLP TasksPatrick Lewis, Ethan Perez, Aleksandra Piktus, Fabio Petroni et al.NeurIPS 2020 · 19,162 citations
- Self-RAG: Learning to Retrieve, Generate, and Critique through Self-ReflectionAkari Asai, Zeqiu Wu, Yizhong Wang, Avirup Sil et al.ICLR 2024 · 1,798 citations
- Improving Multi-hop Question Answering over Knowledge Graphs using Knowledge Base EmbeddingsApoorv Saxena, Aditay Tripathi, Partha P. TalukdarACL 2020 · 488 citations
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- Simple is Effective: The Roles of Graphs and Large Language Models in Knowledge-Graph-Based Retrieval-Augmented GenerationMufei Li, Siqi Miao, Pan LiICLR 2025
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