Neural P3M: A Long-Range Interaction Modeling Enhancer for Geometric GNNs
Yusong Wang, Chaoran Cheng, Shaoning Li, Yuxuan Ren, Bin Shao, Ge Liu, Pheng-Ann Heng, Nanning Zheng
Abstract
Geometric graph neural networks (GNNs) have emerged as powerful tools for modeling molecular geometry. However, they encounter limitations in effectively capturing long-range interactions in large molecular systems. To address this challenge, we introduce Neural PM, a versatile enhancer of geometric GNNs to expand the scope of their capabilities by incorporating mesh points alongside atoms and reimaging traditional mathematical operations in a trainable manner. Neural PM exhibits flexibility across a wide range of molecular systems and demonstrates remarkable accuracy in predicting energies and forces, outperforming on benchmarks such as the MD22 dataset. It also achieves an average improvement of 22% on the OE62 dataset while integrating with various architectures.
Ask about this paper
Your agent reads all of it.
Lune indexed this paper to the last equation, along with the top-tier papers that cite it. Ask a question and the answer quotes them.
Cited by top-tier papers4
- Are High-Degree Representations Really Unnecessary in Equivariant Graph Neural Networks?Jiacheng Cen, Anyi Li, Ning Lin, Yuxiang Ren et al.NeurIPS 2024 · 31 citations
- Geometric Hyena Networks for Large-scale Equivariant LearningArtem Moskalev, Mangal Prakash, Junjie Xu, Tianyu Cui et al.ICML 2025
- Large-Scale Molecular Dynamics Simulations: Direct Interatomic Modeling with Dilated Message PassingHaokai Hong, Wanyu LIN, KC TanICML 2026
- Geometric Graph Neural Diffusion for Stable Molecular Dynamics SimulationsHaokai Hong, Wanyu Lin, Zhang Chusong, KC TanICLR 2026
Builds on9
- MACE: Higher Order Equivariant Message Passing Neural Networks for Fast and Accurate Force FieldsIlyes Batatia, Dávid Péter Kovács, Gregor N. C. Simm, Christoph Ortner et al.NeurIPS 2022 · 1,448 citations
- Directional Message Passing for Molecular GraphsJohannes Klicpera, Janek Groß, Stephan GünnemannICLR 2020 · 1,079 citations
- Equivariant message passing for the prediction of tensorial properties and molecular spectraKristof Schütt, Oliver T. Unke, Michael GasteggerICML 2021 · 736 citations
- GemNet: Universal Directional Graph Neural Networks for MoleculesJohannes Gasteiger, Florian Becker, Stephan GünnemannNeurIPS 2021 · 665 citations
- Equiformer: Equivariant Graph Attention Transformer for 3D Atomistic GraphsYi-Lun Liao, Tess E. SmidtICLR 2023 · 65 citations
Related papers
- Neural Atoms: Propagating Long-range Interaction in Molecular Graphs through Efficient Communication ChannelXuan Li, Zhanke Zhou, Jiangchao Yao, Yu Rong et al.ICLR 2024 · 13 citations
- GeoTMI: Predicting Quantum Chemical Property with Easy-to-Obtain Geometry via Positional DenoisingHyeonsu Kim, Jeheon Woo, Seonghwan Kim, Seokhyun Moon et al.NeurIPS 2023 · 8 citations
- DualEqui: A Dual-Space Hierarchical Equivariant Network for Large BiomoleculesJunjie Xu, Jiahao Zhang, Mangal Prakash, Xiang Zhang et al.NeurIPS 2025 · 2 citations
- Pushing the Limits of All-Atom Geometric Graph Neural Networks: Pre-Training, Scaling, and Zero-Shot TransferZihan Pengmei, Zhengyuan Shen, Zichen Wang, Marcus D. Collins et al.ICLR 2025
- Quadruple Attention in Many-body Systems for Accurate Molecular Property PredictionsJiahua Rao, Dahao Xu, Wentao Wei, Yicong Chen et al.ICML 2025
