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Towards Next Graph Token Prediction: Discrete Graph Tokenization for Structural Reasoning in Large Language Models

Zhonghao Wang, Yugang Ji, Zhuonan Zheng, Sheng Zhou, Weigao Wen, Minghao Li, Ming Gu, Zhiyao Zhou, Jiajun Bu

2026Year

Abstract

Large Language Models (LLMs), empowered by autoregressive next-token prediction, have demonstrated strong reasoning capabilities. Extending this paradigm to graph data requires next graph token prediction, yet existing graph tokens struggle to balance two competing requirements: capturing higher-order structural semantics with high information density, and remaining strictly reversible for faithful decoding. Concretely, first-order textual encodings are reversible but long and semantically sparse, while continuous encodings capture high-level semantics but inevitably lose exact topology. To this end, we propose GraphVulcan, a novel framework that enables discrete reversible and semantic-rich tokenization of graphs using a vocabulary of canonical graphlets. Our approach preserves full structural fidelity while enabling LLMs to natively reason over compositional graphlets through graph-level next-token prediction. We propose a three-stage training paradigm: (1) Structural Semantic Pretraining to learn graph token compositionality, (2) Multi-task Fine-tuning on large-scale CoT-augmented reasoning examples, and (3) Reinforcement Learning to explore and refine reasoning paths. Experiments show that GraphVulcan outperforms first-order encoding baselines across 7 graph reasoning tasks and 3 real-world benchmarks while achieving higher computational efficiency. Our work demonstrates that structure-aware discrete tokenization is a feasible way toward general-purpose graph–language models capable of structural reasoning. Codes are available at: https://github.com/alibaba-behavioral-risk-control/GraphVulcan

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