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On Explaining Equivariant Graph Networks via Improved Relevance Propagation

Hongyi Ling, Haiyang Yu, Zhimeng Jiang, Na Zou, Shuiwang Ji

2025Year

Abstract

We consider explainability in equivariant graph neural networks for 3D geometric graphs. While many XAI methods have been developed for analyzing graph neural networks, they predominantly target 2D graph structures. The complex nature of 3D data and the sophisticated architectures of equivariant GNNs present unique challenges. Current XAI techniques either struggle to adapt to equivariant GNNs or fail to effectively handle positional data and evaluate the significance of geometric features adequately. To address these challenges, we introduce a novel method, known as EquiGX, which uses the Deep Taylor decomposition framework to extend the layer-wise relevance propagation rules tailored for spherical equivariant GNNs. Our approach decomposes prediction scores and back-propagates the relevance scores through each layer to the input space. Our decomposition rules provide a detailed explanation of each layer's contribution to the network's predictions, thereby enhancing our understanding of how geometric and positional data influence the model's outputs. Through experiments on both synthetic and real-world datasets, our method demonstrates its capability to identify critical geometric structures and outperform alternative baselines. These results indicate that our method provides significantly enhanced explanations for equivariant GNNs. Our code has been released as part of the AIRS library ( https://github.com/divelab/AIRS/ ).

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