Towards Training Billion Parameter Graph Neural Networks for Atomic Simulations
Anuroop Sriram, Abhishek Das, Brandon M. Wood, Siddharth Goyal, C. Lawrence Zitnick
Abstract
Recent progress in Graph Neural Networks (GNNs) for modeling atomic simulations has the potential to revolutionize catalyst discovery, which is a key step in making progress towards the energy breakthroughs needed to combat climate change. However, the GNNs that have proven most effective for this task are memory intensive as they model higher-order interactions in the graphs such as those between triplets or quadruplets of atoms, making it challenging to scale these models. In this paper, we introduce Graph Parallelism, a method to distribute input graphs across multiple GPUs, enabling us to train very large GNNs with hundreds of millions or billions of parameters. We empirically evaluate our method by scaling up the number of parameters of the recently proposed DimeNet++ and GemNet models by over an order of magnitude. On the large-scale Open Catalyst 2020 (OC20) dataset, these graph-parallelized models lead to relative improvements of 1) 15% on the force MAE metric for the S2EF task and 2) 21% on the AFbT metric for the IS2RS task, establishing new state-of-the-art results.
Ask about this paper
Your agent reads all of it.
Lune indexed this paper to the last equation, along with the top-tier papers that cite it. Ask a question and the answer quotes them.
Your agent calls
Luneget_paper_fulltext
Free to start. No credit card required.
Terminal
Install the CLIlune papers fulltext 5b2b946f-0585-43d8-842c-a045db8273fbCited by top-tier papers13
- EquiformerV2: Improved Equivariant Transformer for Scaling to Higher-Degree RepresentationsYi-Lun Liao, Brandon M. Wood, Abhishek Das, Tess E. SmidtICLR 2024 · 311 citations
- UMA: A Family of Universal Models for AtomsBrandon M. Wood, Misko Dzamba, Xiang Fu, Meng Gao et al.NeurIPS 2025 · 282 citations
- Polyhistor: Parameter-Efficient Multi-Task Adaptation for Dense Vision TasksYen-Cheng Liu, Chih-Yao Ma, Junjiao Tian, Zijian He et al.NeurIPS 2022 · 79 citations
- Equiformer: Equivariant Graph Attention Transformer for 3D Atomistic GraphsYi-Lun Liao, Tess E. SmidtICLR 2023 · 65 citations
- From Molecules to Materials: Pre-training Large Generalizable Models for Atomic Property PredictionNima Shoghi, Adeesh Kolluru, John R. Kitchin, Zachary W. Ulissi et al.ICLR 2024 · 63 citations
Builds on9
- Language Models are Few-Shot LearnersTom B. Brown, Benjamin Mann, Nick Ryder, Melanie Subbiah et al.NeurIPS 2020 · 64,255 citations
- Do Transformers Really Perform Badly for Graph Representation?Chengxuan Ying, Tianle Cai, Shengjie Luo, Shuxin Zheng et al.NeurIPS 2021 · 1,632 citations
- Directional Message Passing for Molecular GraphsJohannes Klicpera, Janek Groß, Stephan GünnemannICLR 2020 · 1,079 citations
- Scaling Vision TransformersXiaohua Zhai, Alexander Kolesnikov, Neil Houlsby, Lucas BeyerCVPR 2022 · 767 citations
- GemNet: Universal Directional Graph Neural Networks for MoleculesJohannes Gasteiger, Florian Becker, Stephan GünnemannNeurIPS 2021 · 665 citations
Related papers
- Spherical Channels for Modeling Atomic InteractionsLarry Zitnick, Abhishek Das, Adeesh Kolluru, Janice Lan et al.NeurIPS 2022 · 84 citations
- Plexus: Taming Billion-edge Graphs with 3D Parallel Full-graph GNN TrainingAditya K. Ranjan, Siddharth Singh, Cunyang Wei, Abhinav BhateleSC 2025 · 1 citation
- DistMLIP: A Distributed Inference Platform for Machine Learning Interatomic PotentialsKevin Han, Bowen Deng, Amir Barati Farimani, Gerbrand CederICLR 2026 · 10 citations
- NeutronTask: Scalable and Efficient Multi-GPU GNN Training with Task ParallelismZhenbo Fu, Xin Ai, Qiange Wang, Yanfeng Zhang et al.VLDB 2025 · 4 citations
- NeutronTP: Load-Balanced Distributed Full-Graph GNN Training with Tensor ParallelismXin Ai, Hao Yuan, Zeyu Ling, Qiange Wang et al.VLDB 2025 · 8 citations
