ImputeFormer: Low Rankness-Induced Transformers for Generalizable Spatiotemporal Imputation
Tong Nie, Guoyang Qin, Wei Ma, Yuewen Mei, Jian Sun
Abstract
Missing data is a pervasive issue in both scientific and engineering tasks, especially for the modeling of spatiotemporal data. This problem attracts many studies to contribute to data-driven solutions. Existing imputation solutions mainly include low-rank models and deep learning models. The former assumes general structural priors but has limited model capacity. The latter possesses salient features of expressivity but lacks prior knowledge of the underlying spatiotemporal structures. Leveraging the strengths of both two paradigms, we demonstrate a low rankness-induced Transformer to achieve a balance between strong inductive bias and high model expressivity. The exploitation of the inherent structures of spatiotemporal data enables our model to learn balanced signal-noise representations, making it generalizable for a variety of imputation problems. We demonstrate its superiority in terms of accuracy, efficiency, and versatility in heterogeneous datasets, including traffic flow, solar energy, smart meters, and air quality. Promising empirical results provide strong conviction that incorporating time series primitives, such as low-rankness, can substantially facilitate the development of a generalizable model to approach a wide range of spatiotemporal imputation problems. The model implementation is
Ask about this paper
Your agent reads all of it.
Lune indexed this paper to the last equation, along with the top-tier papers that cite it. Ask a question and the answer quotes them.
Your agent calls
Luneget_paper_fulltext
Free to start. No credit card required.
Terminal
Install the CLIlune papers fulltext 5680a9c3-5919-464e-b81a-2ee6fc324803Cited by top-tier papers20
- Geolocation Representation from Large Language Models Are Generic Enhancers for Spatio-Temporal LearningJunlin He, Tong Nie, Wei MaAAAI 2025 · 18 citations
- Diffusion Transformers as Open-World Spatiotemporal Foundation ModelsYuan Yuan, Chonghua Han, Jingtao Ding, Guozhen Zhang et al.NeurIPS 2025 · 16 citations
- Task-oriented Time Series Imputation Evaluation via Generalized RepresentersZhixian Wang, Linxiao Yang, Liang Sun, Qingsong Wen et al.NeurIPS 2024 · 11 citations
- Glocal Information Bottleneck for Time Series ImputationJie Yang, Kexin Zhang, Guibin Zhang, Philip S. Yu et al.NeurIPS 2025 · 10 citations
- Ultra-High Resolution Segmentation via Boundary-Enhanced Patch-Merging TransformerHaopeng Sun, Yingwei Zhang, Lumin Xu, Sheng Jin et al.AAAI 2025 · 8 citations
Builds on11
- Connecting the Dots: Multivariate Time Series Forecasting with Graph Neural NetworksZonghan Wu, Shirui Pan, Guodong Long, Jing Jiang et al.KDD 2020 · 1,738 citations
- CSDI: Conditional Score-based Diffusion Models for Probabilistic Time Series ImputationYusuke Tashiro, Jiaming Song, Yang Song, Stefano ErmonNeurIPS 2021 · 1,245 citations
- A Time Series is Worth 64 Words: Long-term Forecasting with TransformersYuqi Nie, Nam H. Nguyen, Phanwadee Sinthong, Jayant KalagnanamICLR 2023 · 536 citations
- TimesNet: Temporal 2D-Variation Modeling for General Time Series AnalysisHaixu Wu, Tengge Hu, Yong Liu, Hang Zhou et al.ICLR 2023 · 423 citations
- Inductive Graph Neural Networks for Spatiotemporal KrigingYuankai Wu, Dingyi Zhuang, Aurélie Labbe, Lijun SunAAAI 2021 · 200 citations
Related papers
- SH-Imputer: Spatiotemporal Data Imputation under Sparse Historical Data for Sparse SensingHao Du, Wenbin Liu, En Wang, Yumeng Liang et al.INFOCOM 2026
- Filling the G_ap_s: Multivariate Time Series Imputation by Graph Neural NetworksAndrea Cini, Ivan Marisca, Cesare AlippiICLR 2022 · 179 citations
- Missing Value Imputation on Multidimensional Time SeriesParikshit Bansal, Prathamesh Deshpande, Sunita SarawagiVLDB 2021 · 90 citations
- A Transformer-based Framework for Multivariate Time Series Representation LearningGeorge Zerveas, Srideepika Jayaraman, Dhaval Patel, Anuradha Bhamidipaty et al.KDD 2021 · 66 citations
- PriSTI: A Conditional Diffusion Framework for Spatiotemporal ImputationMingzhe Liu, Han Huang, Hao Feng, Leilei Sun et al.ICDE 2023 · 110 citations
