Federated Causal Discovery from Heterogeneous Data
Loka Li, Ignavier Ng, Gongxu Luo, Biwei Huang, Guangyi Chen, Tongliang Liu, Bin Gu, Kun Zhang
Abstract
Conventional causal discovery methods rely on centralized data, which is inconsistent with the decentralized nature of data in many real-world situations. This discrepancy has motivated the development of federated causal discovery (FCD) approaches. However, existing FCD methods may be limited by their potentially restrictive assumptions of identifiable functional causal models or homogeneous data distributions, narrowing their applicability in diverse scenarios. In this paper, we propose a novel FCD method attempting to accommodate arbitrary causal models and heterogeneous data. We first utilize a surrogate variable corresponding to the client index to account for the data heterogeneity across different clients. We then develop a federated conditional independence test (FCIT) for causal skeleton discovery and establish a federated independent change principle (FICP) to determine causal directions. These approaches involve constructing summary statistics as a proxy of the raw data to protect data privacy. Owing to the nonparametric properties, FCIT and FICP make no assumption about particular functional forms, thereby facilitating the handling of arbitrary causal models. We conduct extensive experiments on synthetic and real datasets to show the efficacy of our method. The code is available at https://github.com/lokali/FedCDH.git .
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Install the CLIlune papers fulltext 536dc2b6-8eb1-4831-9ac6-78e795ee6b91Cited by top-tier papers12
- On Causal Discovery in the Presence of Deterministic RelationsLoka Li, Haoyue Dai, Hanin Al Ghothani, Biwei Huang et al.NeurIPS 2024 · 10 citations
- Gene Regulatory Network Inference in the Presence of Selection Bias and Latent ConfoundersGongxu Luo, Haoyue Dai, Longkang Li, Chengqian Gao et al.NeurIPS 2025 · 9 citations
- Regret-Based Federated Causal Discovery with Unknown InterventionsFederico Baldo, Charles AssaadICML 2026 · 2 citations
- PersonaX: Multimodal Datasets with LLM-Inferred Behavior TraitsLoka Li, Wong Yu Kang, Minghao Fu, Guangyi Chen et al.ICLR 2026 · 2 citations
- Causal Representation Learning from Multimodal Biomedical ObservationsYuewen Sun, Lingjing Kong, Guangyi Chen, Loka Li et al.ICLR 2025
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- Amortized Inference for Causal Structure LearningLars Lorch, Scott Sussex, Jonas Rothfuss, Andreas Krause et al.NeurIPS 2022 · 118 citations
- DAGs with No Fears: A Closer Look at Continuous Optimization for Learning Bayesian NetworksDennis Wei, Tian Gao, Yue YuNeurIPS 2020 · 102 citations
- Efficient Neural Causal Discovery without Acyclicity ConstraintsPhillip Lippe, Taco Cohen, Efstratios GavvesICLR 2022 · 95 citations
- DAGs with No Curl: An Efficient DAG Structure Learning ApproachYue Yu, Tian Gao, Naiyu Yin, Qiang JiICML 2021 · 77 citations
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