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Approximate DBSCAN via Density-Biased Sampling and Kernel Density Estimation

Jian Lin, Siyue Wu, Dingming Wu, Tsz Nam Chan

2026Year

Abstract

DBSCAN (Density-Based Spatial Clustering of Applications with Noise) is a popular unsupervised algorithm that identifies clusters as dense regions separated by sparse areas. It requires no preset number of clusters, can detect arbitrary shapes, and is robust to noise, making it widely adopted. However, exact DBSCAN suffers from efficiency issues, and existing approximate variants often trade accuracy for speed. To address this, we reformulate DBSCAN as a Minimum Connected Dominating Set (MCDS) problem and propose LDBS-KDE, a fast and accurate approximation algorithm. LDBS-KDE selects candidate points via lattice-based density-biased sampling, identifies core points using kernel density estimation, and constructs clusters by grouping cores and assigning remaining points. Extensive experiments on four real-world datasets demonstrate that LDBS -KDE achieves accuracy comparable to, and in some cases surpassing, state-of-the-art methods, while offering an improvement in efficiency by a factor of two up to two orders of magnitude.

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