AtomR: Atomic Operator-Empowered Large Language Models for Heterogeneous Knowledge Reasoning
Amy Xin, Jinxin Liu, Zijun Yao, Zhicheng Lee, Shulin Cao, Lei Hou, Juanzi Li
Abstract
Despite the outstanding capabilities of large language models (LLMs), knowledge-intensive reasoning still remains a challenging task due to LLMs' limitations in compositional reasoning and the hallucination problem. A prevalent solution is to employ chain-of-thought (CoT) with retrieval-augmented generation (RAG), which first formulates a reasoning plan by decomposing complex questions into simpler sub-questions, and then applies iterative RAG at each sub-question. However, prior works exhibit two crucial problems: inadequate reasoning planning and poor incorporation of heterogeneous knowledge. In this paper, we introduce AtomR, a framework for LLMs to conduct accurate heterogeneous knowledge reasoning at the atomic level. Inspired by how knowledge graph query languages model compositional reasoning through combining predefined operations, we propose three atomic knowledge operators, a unified set of operators for LLMs to retrieve and manipulate knowledge from heterogeneous sources. First, in the reasoning planning stage, AtomR decomposes a complex question into a reasoning tree where each leaf node corresponds to an atomic knowledge operator, achieving question decomposition that is highly fine-grained and orthogonal. Subsequently, in the reasoning execution stage, AtomR executes each atomic knowledge operator, which flexibly selects, retrieves, and operates atomic level knowledge from heterogeneous sources. We also introduce BlendQA, a challenging benchmark specially tailored for heterogeneous knowledge reasoning. Experiments on three single-source and two multi-source datasets show that AtomR outperforms state-of-the-art baselines by a large margin, with absolute F1 score improvements of 9.4% on 2WikiMultihop and 9.5% on BlendQA. We release our code and data https://github.com/THU-KEG/AtomR.git.
Ask about this paper
Your agent reads all of it.
Lune indexed this paper to the last equation, along with the top-tier papers that cite it. Ask a question and the answer quotes them.
Cited by top-tier papers6
- Atom of Thoughts for Markov LLM Test-Time ScalingFengwei Teng, Quan Shi, Zhaoyang Yu, Jiayi Zhang et al.NeurIPS 2025 · 73 citations
- How do Transformers Learn Implicit Reasoning?Jiaran Ye, Zijun Yao, Zhidian Huang, Liangming Pan et al.NeurIPS 2025 · 17 citations
- Large Language Models Meet Knowledge Graphs for Question Answering: Synthesis and OpportunitiesChuangtao Ma, Yongrui Chen, Tianxing Wu, Arijit Khan et al.EMNLP 2025 · 6 citations
- S-DAG: A Subject-Based Directed Acyclic Graph for Multi-Agent Heterogeneous ReasoningJiangwen Dong, Zehui Lin, Wanyu Lin, Mingjin ZhangAAAI 2026 · 4 citations
- Beyond the Answer: Advancing Multi-Hop QA with Fine-Grained Graph Reasoning and EvaluationQichuan Liu, Chentao Zhang, Chenfeng Zheng, Guosheng Hu et al.ACL 2025 · 4 citations
Builds on13
- Chain-of-Thought Prompting Elicits Reasoning in Large Language ModelsJason Wei, Xuezhi Wang, Dale Schuurmans, Maarten Bosma et al.NeurIPS 2022 · 22,562 citations
- Tree of Thoughts: Deliberate Problem Solving with Large Language ModelsShunyu Yao, Dian Yu, Jeffrey Zhao, Izhak Shafran et al.NeurIPS 2023 · 5,068 citations
- Improving Language Models by Retrieving from Trillions of TokensSebastian Borgeaud, Arthur Mensch, Jordan Hoffmann, Trevor Cai et al.ICML 2022 · 1,629 citations
- Faith and Fate: Limits of Transformers on CompositionalityNouha Dziri, Ximing Lu, Melanie Sclar, Xiang Lorraine Li et al.NeurIPS 2023 · 728 citations
- HippoRAG: Neurobiologically Inspired Long-Term Memory for Large Language ModelsBernal Jimenez Gutierrez, Yiheng Shu, Yu Gu, Michihiro Yasunaga et al.NeurIPS 2024 · 395 citations
Related papers
- BeamAggR: Beam Aggregation Reasoning over Multi-source Knowledge for Multi-hop Question AnsweringZheng Chu, Jingchang Chen, Qianglong Chen, Haotian Wang et al.ACL 2024 · 8 citations
- From Complex to Atomic: Enhancing Augmented Generation via Knowledge-Aware Dual Rewriting and ReasoningJinyu Wang, Jingjing Fu, Rui Wang, Lei Song et al.ICML 2025
- Tree-of-Reasoning Question Decomposition for Complex Question Answering with Large Language ModelsKun Zhang, Jiali Zeng, Fandong Meng, Yuanzhuo Wang et al.AAAI 2024 · 14 citations
- ProgRAG: Hallucination-Resistant Progressive Retrieval and Reasoning over Knowledge GraphsMinbae Park, Hyemin Yang, Jeonghyun Kim, Kunsoo Park et al.AAAI 2026
- Human Cognition Inspired RAG with Knowledge Graph for Complex Problem SolvingYao Cheng, Yibo Zhao, Jiapeng Zhu, Yao Liu et al.AAAI 2026 · 1 citation
