A Theory of Link Prediction via Relational Weisfeiler-Leman on Knowledge Graphs
Xingyue Huang, Miguel Romero, Ismail Ilkan Ceylan, Pablo Barceló
Abstract
Graph neural networks are prominent models for representation learning over graph-structured data. While the capabilities and limitations of these models are well-understood for simple graphs, our understanding remains incomplete in the context of knowledge graphs. Our goal is to provide a systematic understanding of the landscape of graph neural networks for knowledge graphs pertaining to the prominent task of link prediction. Our analysis entails a unifying perspective on seemingly unrelated models and unlocks a series of other models. The expressive power of various models is characterized via a corresponding relational Weisfeiler-Leman algorithm. This analysis is extended to provide a precise logical characterization of the class of functions captured by a class of graph neural networks. The theoretical findings presented in this paper explain the benefits of some widely employed practical design choices, which are validated empirically.
Ask about this paper
Your agent reads all of it.
Lune indexed this paper to the last equation, along with the top-tier papers that cite it. Ask a question and the answer quotes them.
Your agent calls
Luneget_paper_fulltext
Free to start. No credit card required.
Terminal
Install the CLIlune papers fulltext 33aaa6a4-74b8-4931-aff6-c458146e129cCited by top-tier papers16
- GFM-RAG: Graph Foundation Model for Retrieval Augmented GenerationLinhao Luo, Zicheng Zhao, Reza Haffari, Dinh Phung et al.NeurIPS 2025 · 54 citations
- A Foundation Model for Zero-shot Logical Query ReasoningMichael Galkin, Jincheng Zhou, Bruno Ribeiro, Jian Tang et al.NeurIPS 2024 · 20 citations
- HYPER: A Foundation Model for Inductive Link Prediction with Knowledge HypergraphsXingyue Huang, Mikhail Galkin, Michael M. Bronstein, Ismail Ilkan CeylanICLR 2026 · 12 citations
- Flock: A Knowledge Graph Foundation Model via Learning on Random WalksJinwoo Kim, Xingyue Huang, Krzysztof Olejniczak, Kyungbin Min et al.ICLR 2026 · 8 citations
- KnowFormer: Revisiting Transformers for Knowledge Graph ReasoningJunnan Liu, Qianren Mao, Weifeng Jiang, Jianxin LiICML 2024 · 6 citations
Builds on11
- Open Graph Benchmark: Datasets for Machine Learning on GraphsWeihua Hu, Matthias Fey, Marinka Zitnik, Yuxiao Dong et al.NeurIPS 2020 · 3,935 citations
- Composition-based Multi-Relational Graph Convolutional NetworksShikhar Vashishth, Soumya Sanyal, Vikram Nitin, Partha P. TalukdarICLR 2020 · 1,105 citations
- Principal Neighbourhood Aggregation for Graph NetsGabriele Corso, Luca Cavalleri, Dominique Beaini, Pietro Liò et al.NeurIPS 2020 · 914 citations
- Neural Bellman-Ford Networks: A General Graph Neural Network Framework for Link PredictionZhaocheng Zhu, Zuobai Zhang, Louis-Pascal A. C. Xhonneux, Jian TangNeurIPS 2021 · 546 citations
- Inductive Relation Prediction by Subgraph ReasoningKomal K. Teru, Etienne G. Denis, William L. HamiltonICML 2020 · 493 citations
Related papers
- Rethinking and Extending the Probabilistic Inference Capacity of GNNsTuo Xu, Lei ZouICLR 2024 · 2 citations
- A New Perspective on "How Graph Neural Networks Go Beyond Weisfeiler-Lehman?"Asiri Wijesinghe, Qing WangICLR 2022 · 120 citations
- Path Neural Networks: Expressive and Accurate Graph Neural NetworksGaspard Michel, Giannis Nikolentzos, Johannes F. Lutzeyer, Michalis VazirgiannisICML 2023 · 45 citations
- 𝒩-WL: A New Hierarchy of Expressivity for Graph Neural NetworksQing Wang, Dillon Ze Chen, Asiri Wijesinghe, Shouheng Li et al.ICLR 2023
- Ordered Subgraph Aggregation NetworksChendi Qian, Gaurav Rattan, Floris Geerts, Mathias Niepert et al.NeurIPS 2022 · 81 citations
