Comprehensive Evaluation of GNN Training Systems: A Data Management Perspective
Hao Yuan, Yajiong Liu, Yanfeng Zhang, Xin Ai, Qiange Wang, Chaoyi Chen, Yu Gu, Ge Yu
Abstract
Many Graph Neural Network (GNN) training systems have emerged recently to support efficient GNN training. Since GNNs embody complex data dependencies between training samples, the training of GNNs should address distinct challenges different from DNN training in data management, such as data partitioning, batch preparation for mini-batch training, and data transferring between CPUs and GPUs. These factors, which take up a large proportion of training time, make data management in GNN training more significant. This paper reviews GNN training from a data management perspective and provides a comprehensive analysis and evaluation of the representative approaches. We conduct extensive experiments on various benchmark datasets and show many interesting and valuable results. We also provide some practical tips learned from these experiments, which are helpful for designing GNN training systems in the future.
Ask about this paper
Your agent reads all of it.
Lune indexed this paper to the last equation, along with the top-tier papers that cite it. Ask a question and the answer quotes them.
Your agent calls
Luneget_paper_fulltext
Free to start. No credit card required.
Terminal
Install the CLIlune papers fulltext 23174377-0dc3-4cab-b360-16b486c54a10Cited by top-tier papers9
- Graph Neural Network Training Systems: A Performance Comparison of Full-Graph and Mini-BatchSaurabh Bajaj, Hui Guan, Marco Serafini, Juelin Liu et al.VLDB 2025 · 19 citations
- Can Graph Reordering Speed Up Graph Neural Network Training? An Experimental StudyNikolai Merkel, Pierre Toussing, Ruben Mayer, Hans-Arno JacobsenVLDB 2025 · 8 citations
- NeutronTP: Load-Balanced Distributed Full-Graph GNN Training with Tensor ParallelismXin Ai, Hao Yuan, Zeyu Ling, Qiange Wang et al.VLDB 2025 · 8 citations
- A Comprehensive Benchmark on Spectral GNNs: The Impact on Efficiency, Memory, and EffectivenessNingyi Liao, Haoyu Liu, Zulun Zhu, Siqiang Luo et al.SIGMOD 2026 · 4 citations
- Full-Graph vs. Mini-Batch Training: Comprehensive Analysis from a Batch Size and Fan-Out Size PerspectiveMengfan Liu, Da Zheng, Junwei Su, Chuan WuICLR 2026 · 2 citations
Builds on23
- GraphSAINT: Graph Sampling Based Inductive Learning MethodHanqing Zeng, Hongkuan Zhou, Ajitesh Srivastava, Rajgopal Kannan et al.ICLR 2020 · 1,155 citations
- Dorylus: Affordable, Scalable, and Accurate GNN Training with Distributed CPU Servers and Serverless ThreadsJohn Thorpe, Yifan Qiao, Jonathan Eyolfson, Shen Teng et al.OSDI 2021 · 175 citations
- DistGNN: scalable distributed training for large-scale graph neural networksMd. Vasimuddin, Sanchit Misra, Guixiang Ma, Ramanarayan Mohanty et al.SC 2021 · 110 citations
- ByteGNN: Efficient Graph Neural Network Training at Large ScaleChenguang Zheng, Hongzhi Chen, Yuxuan Cheng, Zhezheng Song et al.VLDB 2022 · 107 citations
- GNNLab: a factored system for sample-based GNN training over GPUsJianbang Yang, Dahai Tang, Xiaoniu Song, Lei Wang et al.EuroSys 2022 · 105 citations
Related papers
- Optimizing Task Placement and Online Scheduling for Distributed GNN Training AccelerationZiyue Luo, Yixin Bao, Chuan WuINFOCOM 2022 · 12 citations
- WiseGraph: Optimizing GNN with Joint Workload Partition of Graph and OperationsKezhao Huang, Jidong Zhai, Liyan Zheng, Haojie Wang et al.EuroSys 2024 · 11 citations
- Efficient scaling of dynamic graph neural networksVenkatesan T. Chakaravarthy, Shivmaran S. Pandian, Saurabh Raje, Yogish Sabharwal et al.SC 2021 · 35 citations
- Scaling New Heights: Transformative Cross-GPU Sampling for Training Billion-Edge GraphsYaqi Xia, Donglin Yang, Xiaobo Zhou, Dazhao ChengSC 2024 · 4 citations
- BGL: GPU-Efficient GNN Training by Optimizing Graph Data I/O and PreprocessingTianfeng Liu, Yangrui Chen, Dan Li, Chuan Wu et al.NSDI 2023
