PaGE-Link: Path-based Graph Neural Network Explanation for Heterogeneous Link Prediction
Shichang Zhang, Jiani Zhang, Xiang Song, Soji Adeshina, Da Zheng, Christos Faloutsos, Yizhou Sun
Abstract
Transparency and accountability have become major concerns for black-box machine learning (ML) models. Proper explanations for the model behavior increase model transparency and help researchers develop more accountable models. Graph neural networks (GNN) have recently shown superior performance in many graph ML problems than traditional methods, and explaining them has attracted increased interest. However, GNN explanation for link prediction (LP) is lacking in the literature. LP is an essential GNN task and corresponds to web applications like recommendation and sponsored search on web. Given existing GNN explanation methods only address node/graph-level tasks, we propose Path-based GNN Explanation for heterogeneous Link prediction (PaGE-Link) that generates explanations with connection interpretability, enjoys model scalability, and handles graph heterogeneity. Qualitatively, PaGE-Link can generate explanations as paths connecting a node pair, which naturally captures connections between the two nodes and easily transfer to human-interpretable explanations. Quantitatively, explanations generated by PaGE-Link improve AUC for recommendation on citation and user-item graphs by 9 -35% and are chosen as better by 78.79% of responses in human evaluation. CCS CONCEPTS • Computing methodologies → Neural networks; • Mathematics of computing → Graph algorithms.
Ask about this paper
Your agent reads all of it.
Lune indexed this paper to the last equation, along with the top-tier papers that cite it. Ask a question and the answer quotes them.
Your agent calls
Luneget_paper_fulltext
Free to start. No credit card required.
Terminal
Install the CLIlune papers fulltext 0beee0c6-c734-4f76-b4cc-5ac13be7d5a7Cited by top-tier papers10
- G-Refer: Graph Retrieval-Augmented Large Language Model for Explainable RecommendationYuhan Li, Xinni Zhang, Linhao Luo, Heng Chang et al.WWW 2025 · 46 citations
- Path-based Explanation for Knowledge Graph CompletionHeng Chang, Jiangnan Ye, Alejo Lopez-Avila, Jinhua Du et al.KDD 2024 · 14 citations
- UNR-Explainer: Counterfactual Explanations for Unsupervised Node Representation Learning ModelsHyunju Kang, Geonhee Han, Hogun ParkICLR 2024 · 8 citations
- Rule-Guided Graph Neural Networks for Explainable Knowledge Graph ReasoningZhe Wang, Suxue Ma, Kewen Wang, Zhiqiang ZhuangAAAI 2025 · 5 citations
- eXpath: Explaining Knowledge Graph Link Prediction with Ontological Closed Path RulesYe Sun, Lei Shi, Yongxin TongVLDB 2025 · 3 citations
Builds on12
- Parameterized Explainer for Graph Neural NetworkDongsheng Luo, Wei Cheng, Dongkuan Xu, Wenchao Yu et al.NeurIPS 2020 · 888 citations
- Neural Bellman-Ford Networks: A General Graph Neural Network Framework for Link PredictionZhaocheng Zhu, Zuobai Zhang, Louis-Pascal A. C. Xhonneux, Jian TangNeurIPS 2021 · 546 citations
- On Explainability of Graph Neural Networks via Subgraph ExplorationsHao Yuan, Haiyang Yu, Jie Wang, Kang Li et al.ICML 2021 · 498 citations
- PGM-Explainer: Probabilistic Graphical Model Explanations for Graph Neural NetworksMinh N. Vu, My T. ThaiNeurIPS 2020 · 437 citations
- Generative Causal Explanations for Graph Neural NetworksWanyu Lin, Hao Lan, Baochun LiICML 2021 · 217 citations
Related papers
- SGExplainer: Balanced Path-based Signed Graph Neural Network Explanation for Link Sign PredictionJie Gao, Jia Hu, Geyong Min, Fei HaoWWW 2026
- From Nodes to Narratives: Explaining Graph Neural Networks with LLMs and Graph ContextPeyman Baghershahi, Gregoire Fournier, Pranav Nyati, Sourav MedyaACL 2026 · 9 citations
- DEGREE: Decomposition Based Explanation for Graph Neural NetworksQizhang Feng, Ninghao Liu, Fan Yang, Ruixiang Tang et al.ICLR 2022 · 33 citations
- A Language-Assisted Semantic-Aware Disentangled Method for Link Prediction on Heterogeneous GraphsRongqiang Fang, Yongqi Sun, Jidong Yuan, Hongbo Cao et al.ACM MM 2025 · 1 citation
- SEHG: Bridging Interpretability and Prediction in Self-Explainable Heterogeneous Graph Neural NetworksZhenhua Huang, Wenhao Zhou, Yufeng Li, Xiuyang Wu et al.WWW 2025 · 6 citations
