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Scaling Graph Neural Network Training via Geometric Optimization

Fangzhou Ye, Lingxiang Yin, Hao Zheng

2026Year

Abstract

Wafer-scale computing has emerged as an alternative solution to sustain performance scaling in the post-Moore era, driven by recent technology advancements such as chiplet integration. This enables considerable computing and storage capabilities on a single chip, making it capable of accommodating large machine learning models and datasets. Recent efforts have heralded the promise of wafer-scale architectures for deep learning inference and training. However, scaling the training of Graph Neural Networks in wafer-scale architecture remains a challenge and is relatively unexplored due to irregularities in gradient propagation as well as physical constraints from flat on-chip topologies. In this paper, we propose Aster, a topology-aware framework designed to efficiently support GNN training on arbitrary wafer-scale architectures. The proposed framework, as opposed to the current application or topology-specific heuristics, can be generalized to support any network topology and irregular GNN datasets. Specifically, we mathematically formulate commonly-seen network topologies in their geometric representation and prioritize communication efficiency during GNN workload partitioning and mapping. Based on the geometric representation, we propose a quadratic assignment problem solver to efficiently map irregular dataflows to a flat topology with reduced communication distance. The simulation results show that Aster can achieve performance speedup by2.91×,1.50×,1.84×2.91 \times, 1.50 \times, 1.84 \times, and1.58×1.58 \timesin Mesh and speedup by3.84×,1.56×,2.05×3.84 \times, 1.56 \times, 2.05 \times, and1.49×1.49 \timesin Torus on average compared to Mini-cut [1], ScalaGraph [2], ChunkV [3], and Chunk-E [4], respectively.

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